การคัดแยกและจำแนกยีสต์สะสมไขมันสูงจากดินบริเวณอ่างเก็บน้ำบางพระ จังหวัดชลบุรี

Isolation and Identification of Oleaginous Yeasts from Soils at Bang Phra Reservoir, Chonburi Province

Authors

  • ศศิวิมล ชมชื่น
  • มนัสวี อากรนาค
  • พัชรนันท์ อมรรัตนพันธ์

Keywords:

ไขมันจากจุลินทรีย์ , ยีสต์สะสมไขมันสูง , Candida, Cyberlindnera, Schwanniomyces

Abstract

ไขมันจากยีสต์สะสมไขมันสูงสามารถนำไปใช้ประโยชน์ได้หลายด้านรวมทั้งการผลิตไบโอดีเซลซึ่งเป็นพลังงานทางเลือกประเภทหนึ่งที่ได้รับความสนใจในปัจจุบัน งานวิจัยนี้จึงมีวัตถุประสงค์เพื่อคัดแยก และจัดจำแนกยีสต์ที่มีศักยภาพในการสะสมไขมันสูงจากดินที่เก็บรวบรวมจากบริเวณอ่างเก็บน้ำบางพระ จังหวัดชลบุรี พบว่าสามารถคัดแยกยีสต์ได้ทั้งหมด 39 ไอโซเลท และเมื่อนำยีสต์ทั้งหมดมาคัดกรองการสะสมไขมันด้วยวิธี Nile red fluorescence assay และตรวจสอบการสะสมไขมันของยีสต์ด้วยวิธีย้อมสี Sudan Black B พบว่ามียีสต์ 8 ไอโซเลท ได้แก่ I2, J1, J2, J5, L1, L4, M2 และ O3 ที่มีศักยภาพในการสะสมไขมันสูง เมื่อนำยีสต์ทั้ง 8 ไอโซเลทมาจัดจำแนกด้วยการวิเคราะห์ลำดับนิวคลีโอไทด์บริเวณ ITS1-5.8S rDNA-ITS2 ร่วมกับการวิเคราะห์สายสัมพันธ์เชิงวิวัฒนาการ พบว่ายีสต์ไอโซเลท I2, J5 และ L1 จัดจำแนกได้เป็น Candida tropicalis ยีสต์ไอโซเลท J1 และ M2 จัดจำแนกได้เป็น Cyberlindnera sp. ยีสต์ไอโซเลท J2 และ O3 จัดจำแนกได้เป็น Schwanniomyces vanrijiae var. vanrijiae ในขณะที่ยีสต์ไอโซเลท L4 จัดจำแนกได้เป็น Schwanniomyces sp. โดยยีสต์ ทั้ง 3 จีนัสจัดอยู่ในไฟลัมเดียวกันคือ Ascomycota และแบ่งออกเป็น 2  แฟมิลี โดย Candida กับ Schwanniomyces จัดอยู่ในแฟมิลีเดียวกัน คือ Debaryomycetaceae และ Cyberlindnera จัดอยู่ในแฟมิลี Phaffomycetaceae งานวิจัยนี้แสดงให้เห็นว่าดินเป็นแหล่งอาศัยที่น่าสนใจของยีสต์ที่มีศักยภาพในการสะสมไขมันสูง อีกทั้งให้ข้อมูลพื้นฐานที่สำคัญสำหรับนำไปใช้ในการศึกษาเพิ่มเติมเพื่อนำยีสต์ไปใช้ประโยชน์ต่อไป   Lipid from oleaginous yeasts could be exploited for several applications including the production of biodiesel which is an alternative energy that has been gaining much interest recently. This research aimed to isolate and identify potential oleaginous yeasts from soil samples collected at Bang Phra reservoir in Chonburi province. A total of 39 isolates of yeast were obtained and further screened for intracellular lipid production by Nile red fluorescence assay followed by Sudan Black B staining to observe lipid accumulation in yeast cells. The result showed that there were 8 yeast isolates; I2, J1, J2, J5, L1, L4, M2 and O3 that exhibited high level of intracellular lipid accumulation potential. Identification of yeasts based on nucleotide sequencing of ITS1-5.8S rDNA-ITS2 regions as well as phylogenetic analysis showed that I2, J5 and L1 were identified as Candida tropicalis, J1 and M2 were identified as Cyberlindnera sp., and J2 and O3 were identified as Schwanniomyces vanrijiae var. vanrijiae and L4 was identified as Schwanniomyces sp. These yeast strains belong to the same phylum (Ascomycota) which are divided into 2 families as following; Candida and Schwanniomyces are members of the family Debaryomycetaceae and Cyberlindnera is a member of the family Phaffomycetaceae. This research suggested that soil could be an interesting habitat of potential oleaginous yeasts and this work also provided fundamental and important knowledges for further studies aiming for useful applications.

References

Ageitos, J. M., Vallejo, J. A., Veiga-Crespo, P., & Villa, T. G. (2011). Oily yeasts as oleaginous cell factories. Applied Microbiology and Biotechnology, 90, 1219-1227.

Aljohani, R., Samarasinghe, H., Ashu, T., & Xu, J. (2018). Diversity and relationships among strains of culturable yeasts in agricultural soils in Cameroon. Scientific Reports, 8, 15687.

Amornrattanapan, P. & Thongthep, P. (2019). Isolation and screening of oleaginous yeasts capable of using glycerol as a carbon source. Ramkhamhaeng Research Journal of Sciences and Technology, 22(2), 61-70.

Arous, F., Mechichi, T., Nasri1, M., & Aggelis, G. (2016). Fatty acid biosynthesis during the life cycle of Debaryomyces etchellsii, Microbiology, 162, 1080-1090.

Ayadi, I., Belghith, H., Gargouri, A., & Guerfali, M. (2018). Screening of new oleaginous yeasts for single cell oil production, hydrolytic potential exploitation and agro-industrial by-products valorization. Process Safety and Environmental Protection, 119, 104–114.

Bastos, A. E. R., Moon, D. H., Rossi, A., Trevors, J. T., & Tsai, S. M. (2000). Salt-tolerant phenol degrading microorganisms isolated from Amazonian soil samples. Archives of Microbiology, 174(5), 346-352.

Boontham, W., Limtong, S., Rosa, C. A., Lopes, M. R., Vital, M. J., & Srisuk, N. (2017). Cyberlindnera tropicalis fa, sp. nov., a novel yeast isolated from tropical regions. International Journal of Systematic and Evolutionary Microbiology, 67(8), 2569-2573.

Botha, A. (2011). The importance and ecology of yeasts in soil. Soil Biology and Biochemistry, 43, 1-8.

Burdon, K. (1946). Fatty material in bacteria and fungi revealed by staining dried and fixed slide preparations. Journal of Bacteriology, 52(6), 665-678.

Chanchaichaovivat, A. (2015). Yeast and Yeast Technology. (1st ed.). Bangkok: Kao Thai Advertising & Printing. (in Thai)

Groenewald, M., Lombard, L., de Vries, M., Lopez, A. G., Smith, M., & Crous, P. W. (2018). Diversity of yeast species from Dutch garden soil and the description of six novel Ascomycetes. FEMS Yeast Research, 18(7), 1-14.

Hernández-Chávez, M. J., Clavijo-Giraldo, D. M., Novák, Á., Lozoya-Pérez, N. E., Martínez-Álvarez, J. A., Salinas-Marín, R., Hernández, N. V., Martínez-Duncker, I., Gácser, A., & Mora-Montes, H. M. (2019). Role of protein mannosylation in the Candida tropicalis-Host interaction. Frontiers in Microbiology, 10, 2743.

Jape, A., Harsulkar, A., & Sapre, V. R. (2014). Modified Sudan Black B staining method for rapid screening of oleaginous marine yeasts. International Journal of Current Microbiology and Sciences, 3(9), 41-46.

Kaewwichian, R., & Khamthaiklang, S. (2017). Yeast in mangrove forest soil from the central Thailand and its ability in the degradation of starch, carboxymethylcellulose and xylan. Burapha Science Journal, 22(Special issue; The 9th National Science Reseach Conference), 411-422. (in Thai)

Kurtzman, C. P., Fell, J. W., & Boekhout, T. (2011). Gene sequence analyses and other DNA-based methods for yeast species recognition. In C. P. Kurtzman, J. W. Fell, & T. Boekhout. (Eds), The Yeasts; A taxonomic study. (pp. 137-144). Elsevier.

Kurtzman, C. P., Robnett, C. J. and Basehoar‐Powers, E. (2008). Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Research, 8, 939-954.

Leesing, R., & Nontaso, Ng. (2011). Isolation and cultivation of oleaginous yeast for microbial oil production. KKU Research Journal, 16(2), 112-126. (in Thai)

Li, Q., Du, W., & Liu, D. (2008). Perspectives of microbial oils for biodiesel production. Applied Microbiology and Biotechnology, 80, 749-756.

Limtong, S. (2006). Yeast: Diversity and Biotechnology. (1st ed.). Bangkok: Kasetsart University Press. (in Thai)

Maksimova, I. A., Glushakova, A. M., Kachalkin, A. V., Chernov, I. Y., Panteleeva, S. N., & Reznikova, Z. I. (2016). Yeast communities of Formica aquilonia colonies. Microbiology, 85(1), 124-129.

Miranda, C., Bettencourt, S., Pozdniakova, T., Pereira, J., Sampaio, P., Franco-Duarte, R., & Pais, C. (2020). Modified high-throughput Nile red fluorescence assay for the rapid screening of oleaginous yeasts using acetic acid as carbon source. BMC Microbiology, 20(1), 60.

Ochsenreither, K., Glück C., Stressler T., Fischer L., & Syldatk C. (2016). Production strategies and applications of microbial single cell oils. Frontiers in Microbiology, 7, 1539.

Pan, L. X., Yang, D. F., Shao, L., Li, W., Chen, G. G., & Liang, Z. Q. (2009). Isolation of the oleaginous yeasts from the soil and studies of their lipid producing capacities. Food Technology and Biotechnology, 47, 215-220.

Pawar, P. P., Odaneth, A. A., Vadgama, R. N., & Lali, A. M. (2019). Simultaneous lipid biosynthesis and recovery for oleaginous yeast Yarrowia lipolytica. Biotechnology for Biofuels, 12, 237.

Pongcharoen, P., Chawneua, J., & Tawong, W. (2018). High temperature alcoholic fermentation by new thermotolerant yeast strains Pichia kudriavzevii isolated from sugarcane field soil. Agriculture and Natural Resources, 52, 511-518.

Ratledge, C. (2004). Fatty acid biosynthesis in microorganisms being used for single cell oil production. Biochimie, 86(11), 807-815.

Ratledge, C., & Cohen, Z. (2008). Microbial and algal oils: Do they have a future for biodiesel or as commodity oils? Lipid Technology, 20, 155-160.

Sambrook, J., & Russell, D. W. (2001). Molecular Cloning: A Laboratory Manual. (3rd ed.). New York: Cold Spring Harbor Laboratory Press.

Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, C. A. & Chen, W. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. PNAS, 109(16), 6241- 6246.

Sitepu, I. R., Garay, L. A., Sestric, R., Levin, D., Block, D. E., German, J. B., & Boundy-Mills, K. L. (2014). Oleaginous yeasts for biodiesel: Current and future trends in biology and production. Biotechnology Advances, 32, 1336-1360.

Sitepu, I. R., Ignatia, L., Franz, A. K., Wong, D. M., Faulina, S. A., Tsui, M., Kanti, A., & Mills, K. B. (2012). An improved high-throughput Nile red fluorescence assay for estimating intracellular lipids in a variety of yeast species. Journal of Microbiological Methods, 91, 321-328.

Suzuki, M., & Kurtzman, C. P. (2011). Schwanniomyces Klöcker emend. M. Suzuki & Kurtzman (2010). In C. P. Kurtzman, J. W. Fell, & T. Boekhout. (Eds.), The Yeasts; A Taxonomic Study. (pp. 785-794). London: Elsevier.

White, T. J., Bruns, T., Lee, S. J. W. T., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A., Innis, D. H., Gelfand, J. J., Sninsky, & T. J., White. (Eds.), PCR protocols: A Guide to Methods and Applications. (pp. 315 - 322). New York: Academic Press.

Yaguchi, A., Franaszek, N., O’Neill, K., Lee, S., Sitepu, I., Boundy‑Mills, K. & Blenner, M. (2020). Identification of oleaginous yeasts that metabolize aromatic compounds. Journal of Industrial Microbiology and Biotechnology, https://doi.org/10.1007/s10295-020-02269-5.

Yurkov, A. M. (2018). Yeasts of the soil-obscure but precious. Yeast, 35(5), 369-378.

Yurkov, A. M., Kemler, M., & Begerow, D. (2012). Assessment of yeast diversity in soils under different management regimes. Fungal Ecology, 5(1), 24-35.

Zhu, L. Y., Zong M. H., & Wu, H. (2008). Efficient lipid production with Trichosporon fermentans and its use for biodiesel preparation. Bioresource Technology, 99, 7881-7885.

Zuza-Alves, D. L., Silva-Rocha, W. P., & Chaves, G. M. (2017). An update on Candida tropicalis based on basic and clinical approaches. Frontiers in Microbiology, 8, 1927.

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Published

2022-11-30